Health and Medicine
From Just Solve the File Format Problem
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See [[Scientific Data formats#Biological]] for more formats | See [[Scientific Data formats#Biological]] for more formats | ||
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| + | == Health & Fitness Tracking (consumer) == | ||
| + | * [[Apple Health]] | ||
| + | ** [[Apple Health Export]] | ||
| + | * [[Fitbit]] | ||
| + | * [[Google Fit]] | ||
| + | * [[Microsoft Health and Fitness]] | ||
== Medical Imaging == | == Medical Imaging == | ||
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== Optical == | == Optical == | ||
* [[Eyeglass file format (Ross Spencer)]] - file format invented by digital preservation researcher to demonstrate how to create file formats | * [[Eyeglass file format (Ross Spencer)]] - file format invented by digital preservation researcher to demonstrate how to create file formats | ||
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== Links == | == Links == | ||
* [http://medconfidential.org/how-to-opt-out/ NHS England patients: how to opt-out from having your health data disclosed] | * [http://medconfidential.org/how-to-opt-out/ NHS England patients: how to opt-out from having your health data disclosed] | ||
* [http://www.wired.co.uk/news/archive/2014-02/26/demand-transparency-from-nhs NHS data blunders mean you can't trust Care.data] | * [http://www.wired.co.uk/news/archive/2014-02/26/demand-transparency-from-nhs NHS data blunders mean you can't trust Care.data] | ||
Revision as of 02:02, 16 January 2022
Contents |
Biomedical signals (time series)
- ACQ (AcqKnowledge)
- BCI2000 (The BCI2000 project)
- BioSemi (BDF) data format
- BKR (EEG data format)
- CFWB (Chart Data File Format)
- DICOM-Waveform (An extension of Dicom for storing waveform data)
- ecgML (A markup language for electrocardiogram data acquisition and analysis)
- EDF/EDF+ (European Data Format)
- FEF (File Exchange Format for Vital signs, CEN TS 14271)
- General Data Format for Biosignals
- HL7aECG (Health Level 7 v3 annotated ECG)
- MEF (Multiscale Electrophysiology File Format)
- OpenXDF (Open Exchange Data Format)
- SCP-ECG (Standard Communication Protocol for Computer assisted electrocardiography)
- SIGIF (A digital SIGnal Interchange Format)
- WFDB (Format of Physiobank)
CPAP and oximeters (sleep apnea treatment)
These devices generally use proprietary data formats. The SleepyHead open-source software can read some of them.
- ChoiceMMed MD300W1
- Contec CMS50D
- DeVilbiss Intellipap
- Fisher & Paykel Icon
- Philips Respironics System One
- ResMed S9
- Weinmann SOMNOsoft2
Genetic data
See Scientific Data formats#Biological for more formats
Health & Fitness Tracking (consumer)
Medical Imaging
- Analyze AVW
- Aperio SVS
- BioRad confocal image
- BRIK/HEAD (Voxel data from AFNI programs, dual-file (data and metadata, repectively))
- DeltaVision
- DICOM (Digital Imaging and Communications in Medicine (.dcm))
- gii (NIfTI offspring for brain surface data, single-file (combined data and meta-data) style)
- IMG/HDR (ANALYZE or NIfTI voxel data, dual-file (separate data and metadata, respectively))
- MGH (uncompressed)
- MGZ (zip-compressed)
- MINC (Medical Imaging NetCDF format; since version 2.0, based on HDF5 (.mnc))
- MRC (Medical Research Council)
- NII (Neuroimaging Informatics Technology Initiative (NIfTI) voxel data, single-file (combined data and metadata))
- OME-TIFF (Open Microscopy Imaging format)
- OME-XML (Open Microscopy Imaging format)
- OST (Open Spatio-Temporal) (extensible, open alternative for microscope images)
- SDM (Signed Differential Mapping- brain maps(.sdm))
- TRK (Vector data describing tracts of neurons, used by TrackVis)
Medical Record Keeping and Transaction Processing
Optical
- Eyeglass file format (Ross Spencer) - file format invented by digital preservation researcher to demonstrate how to create file formats
