OME-XML
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| + | == General description == | ||
This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/file-formats/the-ome-xml-file OME-XML page] at the Open Microscopy site. | This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/file-formats/the-ome-xml-file OME-XML page] at the Open Microscopy site. | ||
| + | == Other information == | ||
| + | NA | ||
| + | |||
| + | == Software == | ||
The file format can be created, read and manipulated using the [http://loci.wisc.edu/software/bio-formats Bio-Formats Library] and the [http://www.openmicroscopy.org/site/support/omero4 OMERO Server]. There is an [http://validator.openmicroscopy.org.uk/ OME Validator] to check files, which can lso tell you the OME-XML version. However, almost any software can read the files; you don't need OME software to use OME-XML. | The file format can be created, read and manipulated using the [http://loci.wisc.edu/software/bio-formats Bio-Formats Library] and the [http://www.openmicroscopy.org/site/support/omero4 OMERO Server]. There is an [http://validator.openmicroscopy.org.uk/ OME Validator] to check files, which can lso tell you the OME-XML version. However, almost any software can read the files; you don't need OME software to use OME-XML. | ||
| + | == Sample files == | ||
| + | NA | ||
| + | |||
| + | == Identification == | ||
The file extension is .ome.xml and the MIME Type is xxxxx. | The file extension is .ome.xml and the MIME Type is xxxxx. | ||
| + | == References == | ||
The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 . | The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 . | ||
Revision as of 18:15, 4 November 2012
| File Formats | > | Electronic File Formats | > | Scientific Data formats | > | OME-XML |
Contents |
General description
This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to OME-TIFF, which was developed from it. The format is described on the OME-XML page at the Open Microscopy site.
Other information
NA
Software
The file format can be created, read and manipulated using the Bio-Formats Library and the OMERO Server. There is an OME Validator to check files, which can lso tell you the OME-XML version. However, almost any software can read the files; you don't need OME software to use OME-XML.
Sample files
NA
Identification
The file extension is .ome.xml and the MIME Type is xxxxx.
References
The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 .
