OME-XML
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| − | | | + | |extensions={{ext|ome.xml}} |
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== General description == | == General description == | ||
| − | This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/ | + | This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/ome-model/ome-xml/ OME-XML page] at the Open Microscopy site. |
== Other information == | == Other information == | ||
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== Software == | == Software == | ||
| − | The file format can be created, read and manipulated using the [http:// | + | The file format can be created, read and manipulated using the [http://www.openmicroscopy.org/site/products/bio-formats Bio-Formats Library] and the [http://www.openmicroscopy.org/site/support/omero OMERO Server]. However, almost any software can read the files; you don't need OME software to use OME-XML. |
== Sample files == | == Sample files == | ||
| − | + | Some sample [http://downloads.openmicroscopy.org/images/OME-XML/ OME-XML files] are available. | |
== Identification == | == Identification == | ||
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== References == | == References == | ||
The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 . | The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 . | ||
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| + | [[Category:XML based file formats]] | ||
| + | [[Category:Scientific Data formats]] | ||
Latest revision as of 14:33, 15 July 2016
Contents |
[edit] General description
This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to OME-TIFF, which was developed from it. The format is described on the OME-XML page at the Open Microscopy site.
[edit] Other information
NA
[edit] Software
The file format can be created, read and manipulated using the Bio-Formats Library and the OMERO Server. However, almost any software can read the files; you don't need OME software to use OME-XML.
[edit] Sample files
Some sample OME-XML files are available.
[edit] Identification
The file extension is .ome.xml and the MIME Type is xxxxx.
[edit] References
The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 .
