SAM

From Just Solve the File Format Problem
(Difference between revisions)
Jump to: navigation, search
(Created page with "{{FormatInfo |formattype=electronic |subcat=Scientific Data formats }} '''SAM''' (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (ta...")

Revision as of 02:08, 4 August 2020

File Format
Name SAM
Ontology

SAM (Sequence Alignment/Map) is a data format used for mapping sequences of DNA. It is in text (tab-separated) form, while A companion format BAM is binary. It is classified as an alignment format, as is CRAM. This is as opposed to sequence-only, unaligned, formats such as FASTA and FASTQ.

Identification

Files will often start with a header line (though this is technically optional), such as @HD VN:1.6 SO:coordinate, where the VN parameter gives the version number of the format and this may be followed with a SO or G0 parameter giving sorting order or grouping of alignments.

Specifications

Links

Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox