http://fileformats.archiveteam.org/index.php?action=history&feed=atom&title=Protein_Data_BankProtein Data Bank - Revision history2026-04-16T17:33:08ZRevision history for this page on the wikiMediaWiki 1.19.2http://fileformats.archiveteam.org/index.php?title=Protein_Data_Bank&diff=48910&oldid=prevThorsted at 06:27, 17 July 20242024-07-17T06:27:37Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Protein Data Bank]] ('''PDB''') is a database of proteins and other biological molecules. It is also the name of one of the file formats used in that database. The format stores the structure of a molecule, and related data.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Protein Data Bank]] ('''PDB''') is a database of proteins and other biological molecules. It is also the name of one of the file formats used in that database. The format stores the structure of a molecule, and related data.</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Specifications ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Specifications ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* current official documentation [http://www.wwpdb.org/docs.html here]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* current official documentation [http://www.wwpdb.org/docs.html here]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* Old format specifications from 1992: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/PDB_format_1992.pdf</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* Old format specifications from 1992: <ins class="diffchange diffchange-inline">https://web.archive.org/web/20151027211820/</ins>http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/PDB_format_1992.pdf</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* Version 2.2 specs from 1996: <del class="diffchange diffchange-inline">http</del>://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/pdb_contents_guide2.2.pdf</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* Version 2.2 specs from 1996: <ins class="diffchange diffchange-inline">https://web.archive.org/web/20151027211820/https</ins>://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/pdb_contents_guide2.2.pdf</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Sample files ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Sample files ==</div></td></tr>
</table>Thorstedhttp://fileformats.archiveteam.org/index.php?title=Protein_Data_Bank&diff=18262&oldid=prevJsummers at 22:34, 16 July 20142014-07-16T22:34:28Z<p></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 22:34, 16 July 2014</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|formattype=electronic</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|subcat=Scientific Data formats</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>|extensions={{ext|pdb}}</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>|extensions={{ext|pdb<ins class="diffchange diffchange-inline">}}, {{ext|ent}}, {{ext|brk</ins>}}</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>}}</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">==Overview==</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Protein Data Bank]] (<ins class="diffchange diffchange-inline">'''</ins>PDB<ins class="diffchange diffchange-inline">'''</ins>) <ins class="diffchange diffchange-inline">is a database of proteins and other </ins>biological <ins class="diffchange diffchange-inline">molecules. It is also the name of one of the file formats used in that database. The format stores the structure of a molecule, </ins>and related data.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">A </del>[[Protein Data Bank]] <del class="diffchange diffchange-inline">file </del>(<del class="diffchange diffchange-inline">[[</del>PDB<del class="diffchange diffchange-inline">]]</del>) <del class="diffchange diffchange-inline">encodes </del>biological <del class="diffchange diffchange-inline">protein sequences </del>and related data.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
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<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>==<del class="diffchange diffchange-inline">References</del>==</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">There is also an [[XML]]-based variant of PDB format, named [[PDBML]].</ins></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>== <ins class="diffchange diffchange-inline">Specifications </ins>==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* current official documentation [http://www.wwpdb.org/docs.html here]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* current official documentation [http://www.wwpdb.org/docs.html here]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Old format specifications from 1992: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/PDB_format_1992.pdf</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Old format specifications from 1992: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/PDB_format_1992.pdf</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Version 2.2 specs from 1996: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/pdb_contents_guide2.2.pdf</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Version 2.2 specs from 1996: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/pdb_contents_guide2.2.pdf</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">== Sample files ==</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* ftp://ftp.wwpdb.org/pub/pdb/data/structures/divided/pdb/</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">== Links ==</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* [[Wikipedia:Protein Data Bank (file format)|Wikipedia: Protein Data Bank (file format)]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* [[Wikipedia:Protein Data Bank|Wikipedia: Protein Data Bank]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* [http://www.wwpdb.org/ Worldwide Protein Data Bank website]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* [http://www.pdb.org/ RCSB PDB website]</ins></div></td></tr>
</table>Jsummershttp://fileformats.archiveteam.org/index.php?title=Protein_Data_Bank&diff=6966&oldid=prevDarkstar: /* Overview */ link back to PDB disambig page2012-11-30T17:20:15Z<p><span dir="auto"><span class="autocomment">Overview: </span> link back to PDB disambig page</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Overview==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Overview==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>A [[Protein Data Bank]] file (PDB) encodes biological protein sequences and related data.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>A [[Protein Data Bank]] file (<ins class="diffchange diffchange-inline">[[</ins>PDB<ins class="diffchange diffchange-inline">]]</ins>) encodes biological protein sequences and related data.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==References==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==References==</div></td></tr>
</table>Darkstarhttp://fileformats.archiveteam.org/index.php?title=Protein_Data_Bank&diff=6965&oldid=prevDarkstar: initial version2012-11-30T17:19:39Z<p>initial version</p>
<p><b>New page</b></p><div>{{FormatInfo<br />
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==Overview==<br />
A [[Protein Data Bank]] file (PDB) encodes biological protein sequences and related data.<br />
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==References==<br />
* current official documentation [http://www.wwpdb.org/docs.html here]<br />
* Old format specifications from 1992: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/PDB_format_1992.pdf<br />
* Version 2.2 specs from 1996: http://www.rcsb.org/pdb/file_formats/pdb/pdbguide2.2/pdb_contents_guide2.2.pdf</div>Darkstar