OME-XML - Revision history

Hflynn: update links, add link to sample files, remove ref to broken online validator

2016-07-15T14:33:59Z

update links, add link to sample files, remove ref to broken online validator

Dan Tobias at 14:15, 5 April 2013

2013-04-05T14:15:22Z

DavidFichtmueller: added category Category:XML based file formats

2012-11-20T16:56:31Z

added category Category:XML based file formats

Dan Tobias at 19:09, 17 November 2012

2012-11-17T19:09:46Z

Dan Tobias at 07:07, 7 November 2012

2012-11-07T07:07:53Z

Crusbridge: Restructured page to new template

2012-11-04T18:15:47Z

Restructured page to new template

Crusbridge: Initial page population

2012-11-04T02:42:30Z

Initial page population

New page

{|
|[[File Formats]]
| >
|[[Electronic File Formats]]
| >
|[[Scientific Data formats]]
| >
| OME-XML
|}

This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/file-formats/the-ome-xml-file OME-XML page] at the Open Microscopy site.

The file format can be created, read and manipulated using the [http://loci.wisc.edu/software/bio-formats Bio-Formats Library] and the [http://www.openmicroscopy.org/site/support/omero4 OMERO Server]. There is an [http://validator.openmicroscopy.org.uk/ OME Validator] to check files, which can lso tell you the OME-XML version. However, almost any software can read the files; you don't need OME software to use OME-XML.

The file extension is .ome.xml and the MIME Type is xxxxx.

The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 .

@@ Line 6: / Line 6: @@
 == General description ==
-This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/file-formats/the-ome-xml-file OME-XML page] at the Open Microscopy site.
+This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/ome-model/ome-xml/ OME-XML page] at the Open Microscopy site.
 == Other information ==
@@ Line 12: / Line 12: @@
 == Software ==
-The file format can be created, read and manipulated using the [http://loci.wisc.edu/software/bio-formats Bio-Formats Library] and the [http://www.openmicroscopy.org/site/support/omero4 OMERO Server]. There is an [http://validator.openmicroscopy.org.uk/ OME Validator] to check files, which can lso tell you the OME-XML version. However, almost any software can read the files; you don't need OME software to use OME-XML.
+The file format can be created, read and manipulated using the [http://www.openmicroscopy.org/site/products/bio-formats Bio-Formats Library] and the [http://www.openmicroscopy.org/site/support/omero OMERO Server]. However, almost any software can read the files; you don't need OME software to use OME-XML.
 == Sample files ==
-NA
+Some sample [http://downloads.openmicroscopy.org/images/OME-XML/ OME-XML files] are available.
 == Identification ==

@@ Line 1: / Line 1: @@
 {{FormatInfo
 |formattype=electronic
-|subcat=Scientific Data formats
+|subcat=Health and Medicine
 |extensions={{ext|ome.xml}}
 }}
@@ Line 24: / Line 24: @@
 [[Category:XML based file formats]]

← Older revision		Revision as of 16:56, 20 November 2012
Line 22:		Line 22:
	== References ==		== References ==
	The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 .		The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 .
		+
		+	[[Category:XML based file formats]]

@@ Line 1: / Line 1: @@
-{|
+{{FormatInfo
-|[[File Formats]]
+|formattype=electronic
-| >
+|subcat=Scientific Data formats
-|[[Electronic File Formats]]
+|extensions={{ext|ome.xml}}
-| >
+}}
-|[[Scientific Data formats]]
-| >
-|[[OME-XML]]
-|}
 == General description ==

@@ Line 9: / Line 9: @@
 |}
 This page describes the OME-XML file format for Open Microscopy, defined to make it simple to move microscopy data from one site and user to another. This format is related to [[OME-TIFF]], which was developed from it. The format is described on the [http://www.openmicroscopy.org/site/support/file-formats/the-ome-xml-file OME-XML page] at the Open Microscopy site.
 The file format can be created, read and manipulated using the [http://loci.wisc.edu/software/bio-formats Bio-Formats Library] and the [http://www.openmicroscopy.org/site/support/omero4 OMERO Server]. There is an [http://validator.openmicroscopy.org.uk/ OME Validator] to check files, which can lso tell you the OME-XML version. However, almost any software can read the files; you don't need OME software to use OME-XML.
 The file extension is .ome.xml and the MIME Type is xxxxx.
 The original paper describing the concept is Goldberg, I. G., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., et al. (2005). The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome biology, 6(5), R47. doi:10.1186/gb-2005-6-5-r47 .